RetrogeneDB ID: | retro_mmus_2708 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:147100564..147100976(-) | ||
Located in intron of: | ENSMUSG00000029642 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083988 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps10 | ||
Ensembl ID: | ENSMUSG00000052146 | ||
Aliases: | Rps10, 2210402A09Rik | ||
Description: | ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1914347] |
Percent Identity: | 86.23 % |
Parental protein coverage: | 83.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR |
M.KH.ELADKNVPNLHVMKAM.SLKSR.YVKEQFAWRHF.WYLTNEGIQYL.D.LHLPPEIVPATLR.SR | |
Retrocopy | MSKHLELADKNVPNLHVMKAM*SLKSRDYVKEQFAWRHFCWYLTNEGIQYL*D*LHLPPEIVPATLRQSR |
Parental | PETGRPRPKGPEGERPARFTRGEADRDTYRRSAVPPGADKKAEA-GAGSATEFQFRGGFGRGRGQPPQ |
P.TGRP.PKG.EGE.PARFTRGEADRDTYRRSAVPPG..KKAEA.GAGSATEFQFRG.FG...GQPPQ | |
Retrocopy | PKTGRPWPKGLEGEWPARFTRGEADRDTYRRSAVPPGTYKKAEA>GAGSATEFQFRGSFGCRHGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 28 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .41 RPM |
SRP007412_heart | 0 .00 RPM | 54 .48 RPM |
SRP007412_kidney | 0 .06 RPM | 36 .63 RPM |
SRP007412_liver | 0 .03 RPM | 39 .08 RPM |
SRP007412_testis | 0 .09 RPM | 18 .20 RPM |