RetrogeneDB ID: | retro_mmus_1376 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:98450504..98450846(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps10 | ||
Ensembl ID: | ENSMUSG00000052146 | ||
Aliases: | Rps10, 2210402A09Rik | ||
Description: | ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1914347] |
Percent Identity: | 82.46 % |
Parental protein coverage: | 69.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRGE |
LKSRGY.KEQFAWRHF.W.LTNEGIQYL.DYLHLPPEI.PATL..S.P.TGRP..KGPEGE..ARF.RGE | |
Retrocopy | LKSRGYMKEQFAWRHFFWDLTNEGIQYL*DYLHLPPEIMPATLNGSLPKTGRPLSKGPEGEQHARFPRGE |
Parental | ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ |
.DRDTYRRSAVPPGA.KKAEAG.GSATEFQFRG.FG.G.GQPPQ | |
Retrocopy | PDRDTYRRSAVPPGAEKKAEAGTGSATEFQFRGDFGDGDGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 28 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .41 RPM |
SRP007412_heart | 0 .00 RPM | 54 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 36 .63 RPM |
SRP007412_liver | 0 .00 RPM | 39 .08 RPM |
SRP007412_testis | 0 .00 RPM | 18 .20 RPM |