RetrogeneDB ID: | retro_rnor_359 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:69124045..69124543(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000034175 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps10 | ||
Ensembl ID: | ENSRNOG00000000490 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S10 [Source:UniProtKB/Swiss-Prot;Acc:P63326] |
Percent Identity: | 90.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPEL.DKNVPNLHVMK.MQSLKSRGYVKEQFAW.HFYWY | |
Retrocopy | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELTDKNVPNLHVMKSMQSLKSRGYVKEQFAWTHFYWY |
Parental | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRGEADRDTYRRSAVPPGADKKA |
LTNEGIQYL.DYLHL.PEIVPAT...S.PETGRPRPKGPEG..PARFTRG.ADRDTYRRSAVPPGADKKA | |
Retrocopy | LTNEGIQYLQDYLHLLPEIVPATFSLSHPETGRPRPKGPEGKWPARFTRGKADRDTYRRSAVPPGADKKA |
Parental | EAGAGSATEFQFRGGFGRGRGQPPQ |
E.GAGSATEFQFRGGFG.GRGQ.PQ | |
Retrocopy | ESGAGSATEFQFRGGFGGGRGQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .80 RPM |
SRP017611_liver | 0 .00 RPM | 37 .79 RPM |