Parental gene:

CRLF3, ENSPPYG00000008142

Aliases:None
Description:cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177]
Organism:Orangutan (Pongo abelii)
Coordinates:17:25573506..25624253(-)


>ENSPPYG00000008142
ATGAGGGGGGCGATGGAGCTGGAACCTGAGCTGCTGCTGCAGGAGGCCCGCGAGAACGTGGAGGCAGCGCAGAGCTACCG
GCGGGAGCTGGGTCACCGGCTTGAGGGGCTGCGGGAGGCGCGGAGGCAGATCAAAGAAAGTGCATCACAGACAAGGGATG
TTCTCAAACAGCATTTTAATGATTTAAAGGGAACCCTTGGAAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAG
GTGGACACCATTGAACAGGAGACCATTAAACCACTAGATGACTGCCAGAAGCTCATAGAACACGGAGTCAACACTGCAGA
GGACTTAGTCCGAGAAGGTGAGATCGCCATGCTTGGTGGTGTGGGAGAAGAGAATGAGAAACTGTGGAGCTTTACCAAAA
AGGCCTCGCATATTCAGTTGGACAGCTTACCAGAAGTACCTTTACTGGTTGATGTGCCTTGTTTATCTGCTCAGTTGGAT
GACTCAATTCTTAACATAGTGAAAGACCACATTTTTAAGCATGGAACAGTAGCATCTCGCCCACCAGTACAGATAGAAGA
ACTAATCGAGAAACCTGGAGGCATCATTGTACGATGGTGTAAGGTGGATGATGACTTTACAGCCCAAGATTACAGGCTCC
AGTTTCGTAAATGTACTTCAAATCATTTTGAGGATGTATATGTAGGTTCTGAAACTGAATTCATAGTATTGCACATAGAC
CCCAACGTTGATTACCAGTTCAGAGTCTGCGCCCGAGGAGATGGTCGACAGGAGTGGAGTCCTTGGAGTGTCCCCCAGAT
AGGTCATTCCACATTGGTGCCTCATGAGTGGACAGCTGGTTTTGAGGGGTACAGTCTGAGCAGTCGAAGAAATATAGCAC
TCCGGAACGATTCTGAATCATCGGGTGTTCTCTACTCCAGAGCTCCGACTTATTTCTGTGGGCAGACATTAACATTCAGA
GTTGAAACTGTGGGACAACCAGACAGAAGAGATAGCATAGGAGTGTGTGCAGAAAAACAGGATGGATATGACTCTCTGCA
GCGGGATCAAGCTGTGTGCATTAGTACAAATGGTGCAGTTTTTGTCAATGGAAAAGAAATGACAAATCAGTTACCCGCAG
TTACTTCTGGGTCCACTGTCACGTTTGACATTGAAGCCGTGACTCTAGGAACCACCAGTAATAATGAAGGTGGACACTTC
AAGCTTCGAGTAACTATAAGTTCAAATAATAGAGAAGTGGTTTTTGACTGGTTACTTGATCAGTCTTGTGGTTCTCTTTA
CTTTGGATGCTCATTTTTCTATCCTGGATGGAAAGTGTTAGTGTTTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .55 RPM
SRP007412_cerebellum 17 .75 RPM
SRP007412_heart 4 .61 RPM
SRP007412_kidney 5 .70 RPM
SRP007412_liver 5 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000014163 ortholog_one2one 1 retrogene
retro_cjac_1183,
Homo sapiens ENSG00000176390 ortholog_one2one 3 retrogenes
retro_hsap_2121, retro_hsap_2133, retro_hsap_3360,
Gorilla gorilla ENSGGOG00000005002 ortholog_one2one 3 retrogenes
retro_ggor_1644, retro_ggor_1649, retro_ggor_2278,
Macaca mulatta ENSMMUG00000009069 ortholog_one2many 2 retrogenes
retro_mmul_1002, retro_mmul_998,
Mus musculus ENSMUSG00000017561 ortholog_one2one 1 retrogene
retro_mmus_368,
Nomascus leucogenys ENSNLEG00000005850 ortholog_one2one 4 retrogenes
retro_nleu_1957, retro_nleu_2534, retro_nleu_2899, retro_nleu_2900,
Pan troglodytes ENSPTRG00000008963 ortholog_one2one 2 retrogenes
retro_ptro_1560, retro_ptro_2175,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1925 79.51 54.75
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2. retro_pabe_1984 64.02 53.17
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3. retro_pabe_2672 80.34 91.63
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Download FASTA sequences of all ENSPPYG00000008142 retrocopies