RetrogeneDB ID: | retro_nleu_1957 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397319.1:11421051..11421731(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSNLEG00000005850 | ||
Aliases: | None | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 63.16 % |
Parental protein coverage: | 59.84 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | TLLQEVDTIEQETIKPLDDCQK-LIEHGVNTAEDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLP |
.LLQE..TI.QETIK.L.DCQ.....H..NTAEDL..E.EI...GG.GE..EKL..FTKKAS.I.LD.L. | |
Retrocopy | SLLQELGTIKQETIKLLGDCQE<VTQHEINTAEDLIQESEITIVGGMGEQIEKL*TFTKKASCI*LDRLL |
Parental | EVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQ |
EV.LLVDVPCL..QL..SIL..VK..IF.HG.VAS..PV....LIEK.G..IV..CK.DDD..AQDYR.Q | |
Retrocopy | EVSLLVDVPCLFVQLNNSILILVKGYIFHHGMVASHLPVEM*ALIEKTGSLIV**CKIDDDTIAQDYRFQ |
Parental | FRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGR--QEWSPWSVPQIGHSTLVPHEWTAGFE |
..KC.SNHF..V.VGSETEFI.LHIDP.VDYQFRV.A.G.....QEWSPWS..QIG.S.L.P.E.TAG.. | |
Retrocopy | LHKCNSNHFKYVCVGSETEFIALHIDPSVDYQFRVYAGGQRTS*QEWSPWSILQIGYSILMPPEGTAGLK |
Parental | GYSLSSRRNIALRNDSES |
GY.LS..RNI.L..DSES | |
Retrocopy | GYTLSN*RNISLQLDSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |