RetrogeneDB ID: | retro_hsap_2133 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:104110820..104111696(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236596 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSG00000176390 | ||
Aliases: | CRLF3, CREME-9, CREME9, CRLM9, CYTOR4, FRWS, p48.2 | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 81.63 % |
Parental protein coverage: | 66.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVRE |
.IKESASQT.DVLKQHF.DLKGT.GKLLDERLVTLLQEV.TI.Q.TIKPLDDCQKLIEH.VNT.E.LV.E | |
Retrocopy | EIKESASQTSDVLKQHFHDLKGTHGKLLDERLVTLLQEVGTIKQ-TIKPLDDCQKLIEHRVNTPEGLVQE |
Parental | GEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPP |
.EIAMLGGV.EENEKLWSFTKKA.H.QLDS.PEVPLLVDVPCLSAQLD..ILNI.KDHI.KHGTVASRPP | |
Retrocopy | DEIAMLGGV-EENEKLWSFTKKALHVQLDSIPEVPLLVDVPCLSAQLDECILNIMKDHILKHGTVASRPP |
Parental | VQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCAR |
VQIEELIEKPGGIIV.WCKVDDDFTAQD.RLQFRKCTSN.FEDVYVGSETEF.VLHID.NV...FR.C.R | |
Retrocopy | VQIEELIEKPGGIIVQWCKVDDDFTAQDDRLQFRKCTSNRFEDVYVGSETEFRVLHIDSNVEDHFRICTR |
Parental | GDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSESSGVLYSRAPTYFCGQTLTFRVE |
.DG.QE.SPWSVPQ..HS...PHEWTAGFE..S.S..RN...RNDS.SSGVL.SRAPTY..GQTL.FRVE | |
Retrocopy | RDG*QEQSPWSVPQLVHSISEPHEWTAGFERSSVSNGRNTSCRNDSKSSGVLNSRAPTYLSGQTLIFRVE |
Parental | TVGQPDRRDSIGVC |
TV..PDRRD.IGVC | |
Retrocopy | TVELPDRRDCIGVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 17 .63 RPM |
bodymap2_adrenal | 0 .00 RPM | 44 .73 RPM |
bodymap2_brain | 0 .00 RPM | 11 .98 RPM |
bodymap2_breast | 0 .00 RPM | 13 .97 RPM |
bodymap2_colon | 0 .00 RPM | 13 .05 RPM |
bodymap2_heart | 0 .00 RPM | 7 .00 RPM |
bodymap2_kidney | 0 .00 RPM | 14 .46 RPM |
bodymap2_liver | 0 .00 RPM | 5 .68 RPM |
bodymap2_lung | 0 .00 RPM | 18 .86 RPM |
bodymap2_lymph_node | 0 .00 RPM | 58 .13 RPM |
bodymap2_ovary | 0 .00 RPM | 23 .04 RPM |
bodymap2_prostate | 0 .00 RPM | 16 .82 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4 .91 RPM |
bodymap2_testis | 0 .06 RPM | 33 .82 RPM |
bodymap2_thyroid | 0 .00 RPM | 9 .08 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 185 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1560 |
Gorilla gorilla | retro_ggor_1649 |
Pongo abelii | retro_pabe_1925 |
Macaca mulatta | retro_mmul_1002 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies |
retro_hsap_2121, retro_hsap_2133 , retro_hsap_3360,
|
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |