RetrogeneDB ID: | retro_pabe_1984 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:26097268..26097981(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSPPYG00000008142 | ||
Aliases: | None | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 64.02 % |
Parental protein coverage: | 53.17 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | TLLQEVDTIEQETIKPLDDCQ-KLIEHGVNTAEDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLP |
.LLQE..TI.QETIKPL.DCQ...I.H..NTAEDLV.E.E....GG.GE..EKL..FTKKAS.I.LD.LP | |
Retrocopy | SLLQELGTIKQETIKPLGDCQ<RVIQHEINTAEDLVQESETTIVGGMGE*IEKL*TFTKKASCI*LDRLP |
Parental | EVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQ |
EV.LLVDVPCL.AQL.DSIL..VK..IF.HG.VAS..PV....LIEK.G...V..CK.DDD..A.DYR.Q | |
Retrocopy | EVSLLVDVPCLFAQLNDSILILVKGYIFHHGMVASHLPVEM*ALIEKTGSLTV*RCKIDDDTIAHDYRFQ |
Parental | FRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGD--GRQEWSPWSVPQIGHSTLVPHEWTAGFE |
..KCTSNHF..V.VGSETEFI.LHIDP.VDYQFRV.ARG...G.QEWSPWSV.Q.G.S.L.P.EW.AG.. | |
Retrocopy | LHKCTSNHFKYVCVGSETEFIALHIDPSVDYQFRVYARGQRTG*QEWSPWSVLQKGYSILMPPEWRAGLK |
Parental | GYSLSSRRNIALRNDSES-SGVLYSRAPT |
GY.LS...NI.L..DSES.S...Y.R..T | |
Retrocopy | GYTLSN*SNISLQLDSESFSTLIYFRGQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .75 RPM |
SRP007412_heart | 0 .00 RPM | 4 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .70 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2121 |
Gorilla gorilla | retro_ggor_1644 |
Macaca mulatta | retro_mmul_998 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies |
retro_pabe_1925, retro_pabe_1984 , retro_pabe_2672,
|
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |