RetrogeneDB ID: | retro_hsap_3360 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:99283999..99285200(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250391 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSG00000176390 | ||
Aliases: | CRLF3, CREME-9, CREME9, CRLM9, CYTOR4, FRWS, p48.2 | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 79.41 % |
Parental protein coverage: | 91.86 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | LREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTA |
L.EA.RQIKE.A.QT.DVLKQHFNDLKGTL..LLDERLVTL..EVD.IEQETIKPLDDCQ.LIEHGVNTA | |
Retrocopy | LGEAQRQIKECAPQTKDVLKQHFNDLKGTLEELLDERLVTL**EVDIIEQETIKPLDDCQRLIEHGVNTA |
Parental | EDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGT |
EDLV..GEIAM.G.V.EEN.KL.SF..K.SHIQLDSLPEVPLLVD..CLSAQLDDSIL.IVKD.I.KHGT | |
Retrocopy | EDLV*VGEIAMVGSV-EENDKLHSFAEKVSHIQLDSLPEVPLLVDMLCLSAQLDDSIL-IVKDYISKHGT |
Parental | VASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQ |
VAS.PPVQI.EL..KPG.I.V.WCKVDDDFTAQDYRL.F.K.TSNH.EDV.VGSET.FIVLH.D.N.DYQ | |
Retrocopy | VASLPPVQI*ELKQKPGVITVGWCKVDDDFTAQDYRL*FCKRTSNHYEDVHVGSETQFIVLHMDSNFDYQ |
Parental | FRVCARGDGRQEWSPW-SVPQIGHSTLVPHEWTAGFEGYSLS-SRRNIALRNDSESSGVLYSRAPTYFCG |
..VC..GDG.Q.WSP..SVPQIGH.TLVPHEWTAGFEGYSL..SR.NIA..NDS.SSGVLYSR.PTYFCG | |
Retrocopy | SKVCT*GDGQQDWSPE<SVPQIGHFTLVPHEWTAGFEGYSLK<SRSNIAFWNDSQSSGVLYSRTPTYFCG |
Parental | QTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDI |
QTLTFRVETVGQ.......GV.AEKQ.GYDSLQ.DQA.C.STNG.VFVNGKEMTN.L..VTS..TVTFD. | |
Retrocopy | QTLTFRVETVGQ---KIQYGVFAEKQNGYDSLQQDQAICMSTNGEVFVNGKEMTNELTSVTSVCTVTFDT |
Parental | EAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPGWKVLVF |
EAVTLGTT.NNEG..FKLRVTISSNNREVVF..LLDQSCGSLYFGC.FFYPGWK.LVF | |
Retrocopy | EAVTLGTTNNNEGRNFKLRVTISSNNREVVFN*LLDQSCGSLYFGCPFFYPGWKILVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 17 .63 RPM |
bodymap2_adrenal | 0 .00 RPM | 44 .73 RPM |
bodymap2_brain | 0 .00 RPM | 11 .98 RPM |
bodymap2_breast | 0 .00 RPM | 13 .97 RPM |
bodymap2_colon | 0 .00 RPM | 13 .05 RPM |
bodymap2_heart | 0 .00 RPM | 7 .00 RPM |
bodymap2_kidney | 0 .00 RPM | 14 .46 RPM |
bodymap2_liver | 0 .00 RPM | 5 .68 RPM |
bodymap2_lung | 0 .00 RPM | 18 .86 RPM |
bodymap2_lymph_node | 0 .00 RPM | 58 .13 RPM |
bodymap2_ovary | 0 .00 RPM | 23 .04 RPM |
bodymap2_prostate | 0 .00 RPM | 16 .82 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4 .91 RPM |
bodymap2_testis | 0 .00 RPM | 33 .82 RPM |
bodymap2_thyroid | 0 .00 RPM | 9 .08 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 185 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2175 |
Gorilla gorilla | retro_ggor_2278 |
Pongo abelii | retro_pabe_2672 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies |
retro_hsap_2121, retro_hsap_2133, retro_hsap_3360 ,
|
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |