RetrogeneDB ID: | retro_mmus_368 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:144953520..144954225(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Crlf3 | ||
Ensembl ID: | ENSMUSG00000017561 | ||
Aliases: | Crlf3, BB164954, Creme9, Cytor4 | ||
Description: | cytokine receptor-like factor 3 [Source:MGI Symbol;Acc:MGI:1860086] |
Percent Identity: | 89.03 % |
Parental protein coverage: | 53.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VRWCKVDDDFTAQDYRLQFRKCTANHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQ |
VRW....DDFT.QDYRLQFRKCTANHFED.YVGSE.EFIVLHIDPNVDYQFRVCA.GDGRQEW.PWSVPQ | |
Retrocopy | VRW--MGDDFTVQDYRLQFRKCTANHFEDMYVGSEMEFIVLHIDPNVDYQFRVCAQGDGRQEWTPWSVPQ |
Parental | TGHSTLVPHEWTTGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETVGQPDRRDSIGVC |
TGHSTLV.HEWTTGFEGYSLSS.RNIALRNDAESSGVL.SSAP.YFCGQTLTFRVETVGQPD.RDS.GVC | |
Retrocopy | TGHSTLVLHEWTTGFEGYSLSS*RNIALRNDAESSGVLDSSAPSYFCGQTLTFRVETVGQPD*RDSTGVC |
Parental | AERQNGYESLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTSNSHEGGNAKLRVTI |
AE.QN.YESLQRDQAVCIS.N.AVFVNGKEMTNQLPAVTSGSTVTFDI.A.TLGT.NSHEGGN.KLRVTI | |
Retrocopy | AEKQNDYESLQRDQAVCISRNHAVFVNGKEMTNQLPAVTSGSTVTFDIKAATLGTANSHEGGNSKLRVTI |
Parental | SSNNREVVFDWLLEQACGPLYFGCSFF |
S..NREVVFDWLLEQACGPLYF.CSFF | |
Retrocopy | SYSNREVVFDWLLEQACGPLYFRCSFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .23 RPM |
SRP007412_heart | 0 .00 RPM | 11 .67 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .01 RPM |
SRP007412_liver | 0 .00 RPM | 10 .57 RPM |
SRP007412_testis | 0 .00 RPM | 7 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy |
retro_mmus_368 ,
|
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |