RetrogeneDB ID: | retro_pabe_1925 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:11228459..11229187(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSPPYG00000008142 | ||
Aliases: | None | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 79.51 % |
Parental protein coverage: | 54.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | CQKLIEHG-VNTAEDLVREGEIAMLGGVGEENEKLW-SFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDS |
CQKLIEH..VNT.E.LVREGEIAMLGGVGEENEKL..SFTKKA.H.QLD..PEVPLLVDVPCLS.QLD.S | |
Retrocopy | CQKLIEHQ>VNTPEGLVREGEIAMLGGVGEENEKLC>SFTKKALHVQLDRIPEVPLLVDVPCLSSQLDES |
Parental | ILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSET |
ILN..KDHI.KHGTVASRPP.QI.ELIEKPGGIIV.WCKVDDD.TAQD..LQFRKC.SNHFEDVYVGSET | |
Retrocopy | ILNLMKDHILKHGTVASRPPIQIGELIEKPGGIIVQWCKVDDDCTAQDDSLQFRKCISNHFEDVYVGSET |
Parental | EFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSESSG |
EFIVLH...NV...FR.C...DG.QE.SPWSVPQI.HSTL.PHEWTAGF.G.SLS..RN....NDSESSG | |
Retrocopy | EFIVLHTESNVEDHFRICTQRDG*QERSPWSVPQIVHSTLDPHEWTAGFKGNSLSN*RNMSC*NDSESSG |
Parental | VLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVC |
VL.S.A.TYF.GQTL.FRVETVG.PDRRDSIGVC | |
Retrocopy | VLDSGASTYFSGQTLIFRVETVGLPDRRDSIGVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .75 RPM |
SRP007412_heart | 0 .00 RPM | 4 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .70 RPM |
SRP007412_liver | 0 .00 RPM | 5 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2133 |
Pan troglodytes | retro_ptro_1560 |
Gorilla gorilla | retro_ggor_1649 |
Macaca mulatta | retro_mmul_1002 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies |
retro_pabe_1925 , retro_pabe_1984, retro_pabe_2672,
|
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |