RetrogeneDB ID: | retro_nleu_2899 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397478.1:354309..355345(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSNLEG00000005850 | ||
Aliases: | None | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 76.82 % |
Parental protein coverage: | 93.35 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 6 |
Parental | SASQTR-DVLKQHFNDLKGTLG-KLLDERLVTLL-QEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREG |
SASQT..DVLK.HFNDLKGT....LLDE..VT...QEVD.IEQETIKPLDDCQ.LIEHGVNTAEDLV..G | |
Retrocopy | SASQTK>DVLK*HFNDLKGTMR<ELLDE*SVTFS<QEVDIIEQETIKPLDDCQRLIEHGVNTAEDLV*VG |
Parental | EIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPV |
EIAM.G.V.EENEKL..FTKK.SHIQLDSLPEVPLLVDV.CLSAQLDDSIL..VKD.I.KHGTVAS.PPV | |
Retrocopy | EIAMVGSV-EENEKLYRFTKKVSHIQLDSLPEVPLLVDVLCLSAQLDDSILR-VKDYISKHGTVASLPPV |
Parental | QI-EELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCAR |
QI..ELI.KP..I.V.WCKVDDDFTAQDYRL.F.K.TSNH.EDV.VGSET.FIVLHID.NVDYQF.VC.. | |
Retrocopy | QI**ELIQKPEVITVGWCKVDDDFTAQDYRL*FCKRTSNHYEDVHVGSETQFIVLHIDSNVDYQFKVCT* |
Parental | GDGRQEWSPW-SVPQIGHSTLVPHEWTAGFEGYSL-SSRRNIALRNDSESSGVLYSRAPTYFCGQTLTFR |
GDG.QEWSP..SVPQIGH.TLVPHEWTAG.EGYSL.....NIA..NDS.SSGVLYSR.PTYFCGQTLTFR | |
Retrocopy | GDGQQEWSPE<SVPQIGHFTLVPHEWTAGLEGYSL<ENQSNIAFWNDSQSSGVLYSRTPTYFCGQTLTFR |
Parental | VETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAVFVNGKEMTNQL-PAVTSGSTVTFDIEAVTL |
V.TVGQ.......GV.AEKQ.G.DS.Q.DQA.C.STNG.VFVNGKEM.N.L.P....GSTVTFDIEAVTL | |
Retrocopy | VATVGQ---KRQYGVFAEKQNGNDSVQQDQAICMSTNGEVFVNGKEMINEL>PVTS-GSTVTFDIEAVTL |
Parental | GTTSNNEG |
GTT.NNEG | |
Retrocopy | GTTNNNEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |