RetrogeneDB ID: | retro_nleu_2534 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397368.1:5213490..5214192(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRLF3 | ||
Ensembl ID: | ENSNLEG00000005850 | ||
Aliases: | None | ||
Description: | cytokine receptor-like factor 3 [Source:HGNC Symbol;Acc:17177] |
Percent Identity: | 79.91 % |
Parental protein coverage: | 62.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VNTAEDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIF |
VNT.E.LV.EGEIAMLGGVGEEN.KL.SFTKKA.H.QLDS.PEVPLLVDVPCLSAQLD.SILN..KDHI. | |
Retrocopy | VNTPEGLV*EGEIAMLGGVGEENKKLRSFTKKALHVQLDSIPEVPLLVDVPCLSAQLDESILNTMKDHIL |
Parental | KHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPN |
KHGTVASRPPVQ.EELIEKPGGIIV.WCK.DDD.TAQD.RLQFRKC.SNHFE.VYVGS.TEFIVLH...N | |
Retrocopy | KHGTVASRPPVQTEELIEKPGGIIVQWCKADDDCTAQDDRLQFRKCISNHFEGVYVGSKTEFIVLHTESN |
Parental | VDYQFRVCARGDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSESSGVLYSRAPTYF |
V...FR.C...DG.QE.SPWSVPQI.HS.L.PHEWTAGFEG.SLS.RRN....NDSESSGVL.SRA.TYF | |
Retrocopy | VEDHFRICTQRDG*QERSPWSVPQIVHSILEPHEWTAGFEGNSLSNRRNTSCWNDSESSGVLNSRASTYF |
Parental | CGQTLTFRVETVGQPDRRDSIGVC |
.GQ.L.FRVETVG.PDRRDSIGVC | |
Retrocopy | SGQILIFRVETVGLPDRRDSIGVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014163 | 1 retrocopy | |
Homo sapiens | ENSG00000176390 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000005002 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000009069 | 2 retrocopies | |
Mus musculus | ENSMUSG00000017561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005850 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000008142 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008963 | 2 retrocopies |