Parental gene:

RAN, ENSSSCG00000009746

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:14:25860206..25865077(-)


>ENSSSCG00000009746
ATGGCTGCCCAAGGAGAGCCCCAAGTTCAGTTCAAACTTGTATTGGTTGGTGATGGTGGTACTGGGAAAACTACATTCGT
GAAACGTCATCTGACTGGTGAATTTGAGAAGAAGTATGTAGCTACCTTGGGTGTTGAGGTCCATCCCCTTGTGTTCCATA
CCAACAGAGGACCTATTAAGTTCAATGTATGGGATACGGCTGGTCAGGAGAAATTTGGTGGACTGAGAGATGGCTATTAT
ATCCAAGCTCAGTGTGCCATTATAATGTTTGATGTAACATCGAGAGTTACTTACAAGAACGTACCTAACTGGCATAGAGA
TCTGGTACGAGTGTGTGAAAACATCCCCATTGTGTTGTGTGGCAACAAAGTGGATATTAAGGACAGAAAGGTTAAGGCAA
AATCGATTGTCTTCCACCGAAAGAAGAACCTTCAGTACTACGACATTTCTGCAAAAAGTAACTACAACTTTGAAAAGCCC
TTCCTCTGGCTTGCTAGGAAACTGATCGGAGACCCTAACTTGGAGTTTGTCGCCATGCCTGCTCTTGCCCCGCCAGAGGT
GGTCATGGACCCAGCCTTGGCAGCACAGTATGAGCATGATCTAGAGGTTGCTCAGACAACTGCTCTCCCGGATGAAGATG
ATGACCTGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 148 .53 RPM
SRP014902_testis 266 .20 RPM
SRP018288_heart 124 .76 RPM
SRP018288_kidney 186 .18 RPM
SRP018288_liver 172 .38 RPM
SRP018288_lung 106 .82 RPM
SRP018856_adipose 195 .53 RPM
SRP035408_brain 208 .51 RPM
SRP035408_liver 190 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004222 possible_ortholog 4 retrogenes
retro_amel_1119, retro_amel_1625, retro_amel_1631, retro_amel_700,
Callithrix jacchus ENSCJAG00000003927 ortholog_one2one 8 retrogenes
retro_cjac_1558, retro_cjac_1844, retro_cjac_2509, retro_cjac_2952, retro_cjac_3071, retro_cjac_3107, retro_cjac_4222, retro_cjac_492,
Echinops telfairi ENSETEG00000011875 possible_ortholog 18 retrogenes
retro_etel_1051, retro_etel_1161, retro_etel_1351, retro_etel_1365, retro_etel_1584, retro_etel_1673, retro_etel_1878, retro_etel_1896, retro_etel_1915, retro_etel_2141, retro_etel_2150, retro_etel_2189, retro_etel_294, retro_etel_383, retro_etel_409, retro_etel_412, retro_etel_514, retro_etel_813,
Homo sapiens ENSG00000132341 ortholog_one2one 3 retrogenes
retro_hsap_3126, retro_hsap_3446, retro_hsap_4908,
Gorilla gorilla ENSGGOG00000015340 ortholog_one2one 4 retrogenes
retro_ggor_2142, retro_ggor_2328, retro_ggor_2556, retro_ggor_3066,
Loxodonta africana ENSLAFG00000017673 ortholog_one2one 1 retrogene
retro_lafr_1253,
Macaca mulatta ENSMMUG00000020927 ortholog_one2one 2 retrogenes
retro_mmul_1990, retro_mmul_2641,
Monodelphis domestica ENSMODG00000015601 ortholog_one2many 8 retrogenes
retro_mdom_100, retro_mdom_1718, retro_mdom_1990, retro_mdom_543, retro_mdom_580, retro_mdom_806, retro_mdom_814, retro_mdom_969,
Mus musculus ENSMUSG00000029430 ortholog_one2one 4 retrogenes
retro_mmus_1653, retro_mmus_182, retro_mmus_2029, retro_mmus_265,
Nomascus leucogenys ENSNLEG00000008282 ortholog_one2many 4 retrogenes
retro_nleu_1565, retro_nleu_2303, retro_nleu_2353, retro_nleu_775,
Ornithorhynchus anatinus ENSOANG00000006447 ortholog_one2one 1 retrogene
retro_oana_62,
Oryctolagus cuniculus ENSOCUG00000026506 possible_ortholog 2 retrogenes
retro_ocun_1139, retro_ocun_958,
Otolemur garnettii ENSOGAG00000025046 ortholog_one2one 8 retrogenes
retro_ogar_1482, retro_ogar_1611, retro_ogar_2058, retro_ogar_2560, retro_ogar_2692, retro_ogar_2810, retro_ogar_377, retro_ogar_497,
Pongo abelii ENSPPYG00000005124 ortholog_one2one 3 retrogenes
retro_pabe_2582, retro_pabe_2853, retro_pabe_3815,
Pan troglodytes ENSPTRG00000005636 ortholog_one2one 4 retrogenes
retro_ptro_1762, retro_ptro_2115, retro_ptro_2338, retro_ptro_3273,
Rattus norvegicus ENSRNOG00000000938 ortholog_one2many 3 retrogenes
retro_rnor_138, retro_rnor_410, retro_rnor_917,
Sarcophilus harrisii ENSSHAG00000018018 ortholog_one2one 1 retrogene
retro_shar_538,
Tursiops truncatus ENSTTRG00000012732 ortholog_one2one 6 retrogenes
retro_ttru_1481, retro_ttru_204, retro_ttru_387, retro_ttru_439, retro_ttru_792, retro_ttru_892,
Vicugna pacos ENSVPAG00000008880 ortholog_one2one 3 retrogenes
retro_vpac_436, retro_vpac_589, retro_vpac_85,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_194 92.13 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_771 80.28 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_sscr_1136 79.82 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000009746 retrocopies