Parental gene: | DNAJA1, ENSVPAG00000001299 |
| Aliases: | None |
| Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
| Organism: | Alpaca (Vicugna pacos) |
| Coordinates: | GeneScaffold_1565:177867..189739(+) |
>ENSVPAG00000001299
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTTAAACCCAATGCCACCCACGAAGAATTGAAAAAGGCCTACAG
GAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAG
TGCTCTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGCGGT
TTTGGCTCCCCTATGGATATCTTTGATATGTTTTTTGGAGGAGGGGGAAGGATGCAGAGAGAAAGAAGAGGTAAAAATGT
TGTGCATCAACTCTCAGTAACCCTGGAAGATTTATATAATGGTGCAACGAGAAAACTAGCTCTGCAAAAGAATGTGATTT
GTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTATGCATGGAATGCCAGGGCCATGGGGAGAGGAT
CAGCCCTAAAGATCGATGTAAAAGCTGCAATGGAAGGAAGATAGTTCGAGAGAAGAAAATTCTAGAAGTTCACATTGACA
AAGGTATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGAGATATTATC
ATTGTTTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGATCTTTTCATGTGTATGGACATACAGCTGGT
TGAGGCATTGTGTGGCTTCCAAAAGCCAATATCTACTCTTGACAACCGAACCATAGTCATCACTTCTCATCCAGGTCAGA
TTGTCAAGCATGGAGATATCAAGTGTGTGCTAAATGAAGGGATGCCAATTTATCGTAGACCATTTGAAAAGGGTCGCCTA
ATCATTGAATTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGACTGATGAAATGGACCAGGTAGAACTAGTGGACTTTGATCCAAATCAGGAAAGACGGC
GCCATTACAATGGAGAAGCATACGAGGATGATGAACATCATCCTCGGGGAGGTGTTCAGTGTCAGACCTCTTAA
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTTAAACCCAATGCCACCCACGAAGAATTGAAAAAGGCCTACAG
GAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAG
TGCTCTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGCGGT
TTTGGCTCCCCTATGGATATCTTTGATATGTTTTTTGGAGGAGGGGGAAGGATGCAGAGAGAAAGAAGAGGTAAAAATGT
TGTGCATCAACTCTCAGTAACCCTGGAAGATTTATATAATGGTGCAACGAGAAAACTAGCTCTGCAAAAGAATGTGATTT
GTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTATGCATGGAATGCCAGGGCCATGGGGAGAGGAT
CAGCCCTAAAGATCGATGTAAAAGCTGCAATGGAAGGAAGATAGTTCGAGAGAAGAAAATTCTAGAAGTTCACATTGACA
AAGGTATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGAGATATTATC
ATTGTTTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGATCTTTTCATGTGTATGGACATACAGCTGGT
TGAGGCATTGTGTGGCTTCCAAAAGCCAATATCTACTCTTGACAACCGAACCATAGTCATCACTTCTCATCCAGGTCAGA
TTGTCAAGCATGGAGATATCAAGTGTGTGCTAAATGAAGGGATGCCAATTTATCGTAGACCATTTGAAAAGGGTCGCCTA
ATCATTGAATTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGACTGATGAAATGGACCAGGTAGAACTAGTGGACTTTGATCCAAATCAGGAAAGACGGC
GCCATTACAATGGAGAAGCATACGAGGATGATGAACATCATCCTCGGGGAGGTGTTCAGTGTCAGACCTCTTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007589 | possible_ortholog | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000001818 | possible_ortholog | 23 retrogenes |
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
|
| Gorilla gorilla | ENSGGOG00000007030 | possible_ortholog | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000001527 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000003384 | ortholog_one2one | 7 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000004833 | possible_ortholog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000012366 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_vpac_367 | 84.49 | 78.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSVPAG00000001299 retrocopies