RetrogeneDB ID: | retro_cfam_1994 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:7497924..7498631(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000004401 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 92.83 % |
Parental protein coverage: | 59.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE |
IHQIGPGMVQQIQSVCME.QGHGERISPKDRCKS.NGRKIVREKKILEVHIDKGMKDGQKI.FHGEG.QE | |
Retrocopy | IHQIGPGMVQQIQSVCMERQGHGERISPKDRCKSSNGRKIVREKKILEVHIDKGMKDGQKISFHGEGNQE |
Parental | PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIK |
PGLE.G.IIIVLDQKD.AVFT.RGEDLF.CMDIQLVEALCGFQKPISTLDN.TIVITSHPGQIVKHGDIK | |
Retrocopy | PGLESGYIIIVLDQKDRAVFTPRGEDLFTCMDIQLVEALCGFQKPISTLDNQTIVITSHPGQIVKHGDIK |
Parental | CVLNEGMPIYRRPYEKGRLIIEFKVN-FPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVELVDFDPNQ |
CVLNEGMPIY.RPYEKGRLIIEFKVN..PENGFLSPDK.SLLEKLLPERKEVEETDEMDQVELVDFDPNQ | |
Retrocopy | CVLNEGMPIYHRPYEKGRLIIEFKVN<PPENGFLSPDKRSLLEKLLPERKEVEETDEMDQVELVDFDPNQ |
Parental | ERRRHYNGEAYEDDEHHPRGGVQCQTS |
ER.RHYNGEAYED.EHHPR.GVQCQTS | |
Retrocopy | ERWRHYNGEAYEDVEHHPRAGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .07 RPM | 54 .41 RPM |
SRP017611_liver | 0 .00 RPM | 20 .30 RPM |