RetrogeneDB ID: | retro_shar_762 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864165.1:103..906(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSSHAG00000012366 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 67.59 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | KMVKETTYYDVLGVKPNAS-QEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRD-LYDKG |
KMVKET.YYD.LGVKP.AS.QEEL.K.YRKLALKY.PD.N.NEGEKFK.I..A...LSDAKKRD.LYDKG | |
Retrocopy | KMVKETIYYDILGVKPIAS<QEEL*KTYRKLALKYDPDMNSNEGEKFKHIF*ADALLSDAKKRD<LYDKG |
Parental | GEQAIKEGGSGGGFGSPMDIFDMFF-GGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDK |
G.QAIKEGGSGGGFGSPMDIFDM.F.GGGGRMQRE.R.KNVV.QL.VTL.DLYNGATRKLALQKNVICDK | |
Retrocopy | GKQAIKEGGSGGGFGSPMDIFDMLF>GGGGRMQRE*RVKNVVYQLLVTLRDLYNGATRKLALQKNVICDK |
Parental | CEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKK |
CE..G.KKGAVECCPNCRGTG.QIRIHQIGPGMVQQIQSVCME.QGHGER.SP..RCKSCNGRKIV.EKK | |
Retrocopy | CERKGDKKGAVECCPNCRGTGIQIRIHQIGPGMVQQIQSVCMEFQGHGERSSP-*RCKSCNGRKIVLEKK |
Parental | ILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDNAIFTRRGEDLFTCMDIQLVE |
ILEV..DK.MKDGQKI.FHG.GDQEPGLE.GDIIIVLDQK.NAIF....EDLF.CMDI...E | |
Retrocopy | ILEVYTDKSMKDGQKIIFHGKGDQEPGLELGDIIIVLDQKGNAIFR*QDEDLFPCMDILITE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |