RetrogeneDB ID: | retro_cfam_1111 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 23:42646751..42647937(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 95. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ | |
Retrocopy | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
Parental | AIKEGGAGGG-FGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVI-CDKCE |
AIKE.G..GG....PMDIFDMFFGGGGRMQRE.RGKNVVHQLSVTLEDLYNGATRKLALQKNVI.CDKCE | |
Retrocopy | AIKE-GGAGG>VLAPMDIFDMFFGGGGRMQREQRGKNVVHQLSVTLEDLYNGATRKLALQKNVI<CDKCE |
Parental | GRGGKKGAVECC-PNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKI |
GRGGKKGAVE.C.PNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKI | |
Retrocopy | GRGGKKGAVE-C>PNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKI |
Parental | LEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPI |
LEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDH.VFTR.GEDLFMCMDIQLVEALCGFQKP. | |
Retrocopy | LEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHDVFTR*GEDLFMCMDIQLVEALCGFQKPV |
Parental | STLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLP |
STLDNRTIVITSHPGQIVKHGDIKCVLNEGMP.YRRPYEKGRLIIEFKVNFPENGF.SP.KLSLLEKLLP | |
Retrocopy | STLDNRTIVITSHPGQIVKHGDIKCVLNEGMPMYRRPYEKGRLIIEFKVNFPENGFFSPEKLSLLEKLLP |
Parental | ERKEVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
ERKEVEETDEMDQVELVDFDPNQER..HYNGEAYEDDEHHPR.GVQCQTS | |
Retrocopy | ERKEVEETDEMDQVELVDFDPNQERGLHYNGEAYEDDEHHPRDGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 5 .54 RPM | 39 .44 RPM |
SRP017611_brain | 0 .32 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .07 RPM | 20 .30 RPM |