RetrogeneDB ID: | retro_cfam_923 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:14751898..14753085(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 91.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE.FKQISQAYEVLSDAKKRELYDKG.E. | |
Retrocopy | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE-FKQISQAYEVLSDAKKRELYDKGRE* |
Parental | AIKEGGAGGGFGSPMDIFDMFF-GGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
AIKEGGAGGG.GSPMDIFD.FF.G.GGRMQRERRG.NVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG | |
Retrocopy | AIKEGGAGGGLGSPMDIFDTFF>GEGGRMQRERRGENVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
Parental | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE |
..GKKGAVECCPNC..TGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIV.EKKILE | |
Retrocopy | *SGKKGAVECCPNCQSTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVQEKKILE |
Parental | VHIDKGMKDGQKITFHGE-GDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPIS |
VHIDKGMKDGQKITFHGE.GDQEPGLEPGDIII.LDQKD.AVFTRR.EDLFM..DIQLVEALCGFQKPIS | |
Retrocopy | VHIDKGMKDGQKITFHGE>GDQEPGLEPGDIIIILDQKDRAVFTRR-EDLFMSLDIQLVEALCGFQKPIS |
Parental | TLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPE |
TLDNRT.VI.SHPGQIVKHGDIKC.LNEGMPIYRRPYEKGRLII.FKVN.PENGF.SPDKLSLLEKLLPE | |
Retrocopy | TLDNRTMVIISHPGQIVKHGDIKCALNEGMPIYRRPYEKGRLII*FKVNLPENGFPSPDKLSLLEKLLPE |
Parental | RKEVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
RKE.EETDEMDQVELVDFDP..ER.RHYNGE.YEDDEH.P.G.VQCQTS | |
Retrocopy | RKEIEETDEMDQVELVDFDPS*ERWRHYNGEGYEDDEHQPIGVVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .07 RPM | 20 .30 RPM |