RetrogeneDB ID: | retro_cfam_1153 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:37306069..37306662(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000011600 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 89.55 % |
Parental protein coverage: | 50.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVLGV.PNAT.EELKKAYRKLA.KYHPDKNPNEG.KFKQISQAYEVLSDAKKREL.DKG.E. | |
Retrocopy | MVKETTYYDVLGV*PNATLEELKKAYRKLASKYHPDKNPNEGDKFKQISQAYEVLSDAKKRELRDKG-ER |
Parental | AIKEGGAGG-GFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
AIK.GGAG..GFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLAL.KNVICDK.EG | |
Retrocopy | AIK-GGAGV<GFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALPKNVICDKREG |
Parental | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRK |
RGGKKGAVECCPNCRGTGMQ.RIHQIGPGMVQQIQSVCMECQG.GE.ISPKD.CK....R. | |
Retrocopy | RGGKKGAVECCPNCRGTGMQTRIHQIGPGMVQQIQSVCMECQGRGEQISPKDKCKRTGTRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .00 RPM | 20 .30 RPM |