RetrogeneDB ID: | retro_cfam_1457 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:648659..649433(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 98.45 % |
Parental protein coverage: | 64.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE |
RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCN.RKIVREKKILE | |
Retrocopy | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNRRKIVREKKILE |
Parental | VHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPIST |
VHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDI.LVEALCGFQKPIST | |
Retrocopy | VHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDI*LVEALCGFQKPIST |
Parental | LDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPER |
LDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPER | |
Retrocopy | LDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPER |
Parental | KEVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
KEVEETDEMDQVELVDFDPNQER.RHYNGEAY.DDEHHPRGGVQCQTS | |
Retrocopy | KEVEETDEMDQVELVDFDPNQERWRHYNGEAYKDDEHHPRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .07 RPM | 20 .30 RPM |