RetrogeneDB ID: | retro_cfam_1315 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:31055006..31056085(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008555 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 89.07 % |
Parental protein coverage: | 91.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERR |
HPDKNPNE.EKFKQISQAYEVLSDAKKRELYDKG.EQAIKEG.AGGGFGSPMDI.DMFFGGG.RM.RERR | |
Retrocopy | HPDKNPNEKEKFKQISQAYEVLSDAKKRELYDKG-EQAIKEGEAGGGFGSPMDISDMFFGGG-RMERERR |
Parental | GKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCR-GTGMQIRIHQIGPGMVQQ |
GKNVVHQLSVTLEDLYNGATRKLALQ.NVIC.KCEG.G.KKGA....PN...GTGM.IRIHQIGP.MVQQ | |
Retrocopy | GKNVVHQLSVTLEDLYNGATRKLALQRNVICNKCEGQGAKKGA--NVPNAK<GTGMPIRIHQIGPAMVQQ |
Parental | IQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIV |
IQSVCMECQGH.ERISPKDRCKS.NGRKIVREKKILEV.IDKGMKDGQKITFHGEGDQEPGLEP.DIIIV | |
Retrocopy | IQSVCMECQGHRERISPKDRCKSYNGRKIVREKKILEVLIDKGMKDGQKITFHGEGDQEPGLEPRDIIIV |
Parental | LDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYR |
LDQKDH.VFTRR.EDL..CMDIQLVEALCGFQKP.STLDN.TIVITSHPGQ.VKHGDIKCVLNEGM.IYR | |
Retrocopy | LDQKDHDVFTRR-EDLLICMDIQLVEALCGFQKPVSTLDNQTIVITSHPGQTVKHGDIKCVLNEGMSIYR |
Parental | RPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVELVDFDPNQERRRHYNGEAYE |
.PYEKG.LII.FKVNFPE.GFLSPDKLSLLEKLLPERKEVEETDE.DQVELVDFDPNQER.RHYNGEAY. | |
Retrocopy | TPYEKGHLIIKFKVNFPEKGFLSPDKLSLLEKLLPERKEVEETDELDQVELVDFDPNQERWRHYNGEAYK |
Parental | DDEHHP-RGGVQCQTS |
DDEHH..RGGVQCQTS | |
Retrocopy | DDEHHHLRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .00 RPM | 20 .30 RPM |