RetrogeneDB ID: | retro_cfam_1420 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 30:28932878..28934063(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 97.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ | |
Retrocopy | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVIC.KCEGR | |
Retrocopy | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICNKCEGR |
Parental | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
GGKKGAVECCPNCRGTGMQ.RIH.IGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVRE.KILEV | |
Retrocopy | GGKKGAVECCPNCRGTGMQVRIHKIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVRE-KILEV |
Parental | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL |
HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFT.RGEDLFMCMDIQLVEALCGFQKPISTL | |
Retrocopy | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFT-RGEDLFMCMDIQLVEALCGFQKPISTL |
Parental | DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK |
DN.TI.ITSHPGQ.VKHGDIKCVLNEGMPIYRRP.EKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK | |
Retrocopy | DN*TIIITSHPGQTVKHGDIKCVLNEGMPIYRRP*EKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK |
Parental | EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
EVEETDEMDQVELVDFD.NQER.RHYNGEAYEDDEHHPRGGVQCQTS | |
Retrocopy | EVEETDEMDQVELVDFDLNQERWRHYNGEAYEDDEHHPRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .13 RPM | 54 .41 RPM |
SRP017611_liver | 0 .00 RPM | 20 .30 RPM |