Parental gene:

DNAJA1, ENSCAFG00000001818

Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229]
Organism:Dog (Canis familiaris)
Coordinates:11:50156088..50167536(+)


>ENSCAFG00000001818
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAGGAGGAATTGAAAAAGGCTTACAG
AAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTATGAAG
TGCTCTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCTGGTGGTGGT
TTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGCAGGATGCAGAGAGAACGGAGAGGTAAAAATGT
TGTACATCAGCTCTCAGTAACCTTAGAAGATCTCTATAATGGCGCAACAAGAAAACTAGCTCTGCAAAAGAATGTGATTT
GCGATAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCAGTCGAATGTTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAATCTGTGTGCATGGAGTGCCAGGGCCATGGGGAACGGAT
CAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATCGTTCGAGAGAAGAAGATTCTAGAGGTGCATATTGACA
AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAGGGAGACCAAGAACCAGGACTGGAACCAGGAGATATTATC
ATTGTTTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGATCTTTTCATGTGTATGGATATACAGCTGGT
TGAAGCCCTGTGTGGCTTTCAAAAGCCAATATCTACTCTTGACAACCGAACCATCGTCATCACCTCTCATCCAGGTCAGA
TTGTCAAGCATGGGGATATCAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAGAAGGGTCGCCTA
ATCATCGAATTTAAGGTAAACTTCCCCGAGAATGGCTTTCTCTCTCCTGATAAACTTTCTTTGCTGGAAAAACTCCTACC
TGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCAGGTAGAACTTGTGGACTTTGATCCCAATCAGGAGAGACGGC
GCCATTACAATGGGGAAGCATATGAGGATGATGAACATCATCCTAGGGGTGGTGTTCAGTGTCAGACTTCTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 39 .44 RPM
SRP017611_brain 52 .95 RPM
SRP017611_kidney 54 .41 RPM
SRP017611_liver 20 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 ortholog_one2one 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus ENSBTAG00000016265 ortholog_one2one 6 retrogenes
retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Choloepus hoffmanni ENSCHOG00000000631 possible_ortholog 9 retrogenes
retro_chof_1760, retro_chof_186, retro_chof_2020, retro_chof_2541, retro_chof_2694, retro_chof_287, retro_chof_417, retro_chof_498, retro_chof_946,
Callithrix jacchus ENSCJAG00000008022 possible_ortholog 10 retrogenes
retro_cjac_1645, retro_cjac_1777, retro_cjac_2015, retro_cjac_2120, retro_cjac_2730, retro_cjac_2731, retro_cjac_2763, retro_cjac_3037, retro_cjac_3762, retro_cjac_887,
Cavia porcellus ENSCPOG00000000462 possible_ortholog 6 retrogenes
retro_cpor_1456, retro_cpor_225, retro_cpor_386, retro_cpor_396, retro_cpor_561, retro_cpor_781,
Dasypus novemcinctus ENSDNOG00000018342 ortholog_one2one 3 retrogenes
retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Echinops telfairi ENSETEG00000016984 possible_ortholog 6 retrogenes
retro_etel_1015, retro_etel_1454, retro_etel_1751, retro_etel_219, retro_etel_482, retro_etel_623,
Felis catus ENSFCAG00000008729 possible_ortholog 5 retrogenes
retro_fcat_1241, retro_fcat_1407, retro_fcat_1502, retro_fcat_1984, retro_fcat_811,
Homo sapiens ENSG00000086061 ortholog_one2one 4 retrogenes
retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Loxodonta africana ENSLAFG00000001527 possible_ortholog 2 retrogenes
retro_lafr_1019, retro_lafr_936,
Myotis lucifugus ENSMLUG00000016086 possible_ortholog 7 retrogenes
retro_mluc_1245, retro_mluc_1485, retro_mluc_1737, retro_mluc_1878, retro_mluc_2062, retro_mluc_2579, retro_mluc_576,
Macaca mulatta ENSMMUG00000007740 possible_ortholog 6 retrogenes
retro_mmul_1313, retro_mmul_1802, retro_mmul_2477, retro_mmul_2482, retro_mmul_2625, retro_mmul_400,
Monodelphis domestica ENSMODG00000003384 ortholog_one2many 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mustela putorius furo ENSMPUG00000004231 possible_ortholog 2 retrogenes
retro_mputfur_1543, retro_mputfur_487,
Mus musculus ENSMUSG00000028410 possible_ortholog 3 retrogenes
retro_mmus_2561, retro_mmus_2982, retro_mmus_3507,
Nomascus leucogenys ENSNLEG00000005268 possible_ortholog 4 retrogenes
retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus ENSOCUG00000004833 possible_ortholog 2 retrogenes
retro_ocun_516, retro_ocun_70,
Procavia capensis ENSPCAG00000012273 possible_ortholog 2 retrogenes
retro_pcap_184, retro_pcap_220,
Pongo abelii ENSPPYG00000019141 ortholog_one2one 4 retrogenes
retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes ENSPTRG00000020852 ortholog_one2one 4 retrogenes
retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Pteropus vampyrus ENSPVAG00000011470 possible_ortholog 1 retrogene
retro_pvam_672,
Rattus norvegicus ENSRNOG00000007029 possible_ortholog 2 retrogenes
retro_rnor_2208, retro_rnor_608,
Sorex araneus ENSSARG00000001373 possible_ortholog 5 retrogenes
retro_sara_280, retro_sara_312, retro_sara_671, retro_sara_741, retro_sara_748,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2many 1 retrogene
retro_shar_762,
Sus scrofa ENSSSCG00000011000 possible_ortholog 2 retrogenes
retro_sscr_134, retro_sscr_984,
Ictidomys tridecemlineatus ENSSTOG00000005200 possible_ortholog 4 retrogenes
retro_itri_265, retro_itri_303, retro_itri_378, retro_itri_809,
Tupaia belangeri ENSTBEG00000000596 ortholog_one2one 23 retrogenes
retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tarsius syrichta ENSTSYG00000001329 possible_ortholog 4 retrogenes
retro_tsyr_110, retro_tsyr_1384, retro_tsyr_1921, retro_tsyr_57,
Tursiops truncatus ENSTTRG00000007387 ortholog_one2one 4 retrogenes
retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,
Vicugna pacos ENSVPAG00000001299 possible_ortholog 1 retrogene
retro_vpac_367,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_352 95.79 95.72
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2. retro_cfam_391 95.72 100.00
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3. retro_cfam_419 88.77 91.18
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4. retro_cfam_749 94.63 88.41
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5. retro_cfam_751 100.00 100.00
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6. retro_cfam_923 91.73 100.00
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7. retro_cfam_993 91.98 100.00
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8. retro_cfam_1111 95.00 100.00
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9. retro_cfam_1153 89.55 50.38
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10. retro_cfam_1218 90.95 52.90
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11. retro_cfam_1229 91.65 99.24
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12. retro_cfam_1315 89.07 91.69
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13. retro_cfam_1352 99.24 100.00
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14. retro_cfam_1420 97.23 100.00
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15. retro_cfam_1457 98.45 64.99
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16. retro_cfam_1520 87.38 75.82
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17. retro_cfam_1668 91.71 51.39
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18. retro_cfam_1833 91.05 64.74
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19. retro_cfam_1941 83.77 56.68
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20. retro_cfam_1949 93.47 100.00
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21. retro_cfam_1994 92.83 59.45
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22. retro_cfam_2004 97.57 51.89
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23. retro_cfam_2162 90.37 75.82
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Download FASTA sequences of all ENSCAFG00000001818 retrocopies