RetrogeneDB ID: | retro_cfam_391 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:47914930..47916106(-) | ||
Located in intron of: | ENSCAFG00000002554 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 95.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSD.KKRELYDKGGEQ | |
Retrocopy | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDTKKRELYDKGGEQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
AIKEGGAGGGFG.PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLED.YNGATRKLALQKNVICDKCEGR | |
Retrocopy | AIKEGGAGGGFGFPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDVYNGATRKLALQKNVICDKCEGR |
Parental | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
GGKKGAVECCPNCRGTG.QIRIHQIGPGMVQQIQSVCM..QGHGERISPKDRCKSCNGRKIVREKKILEV | |
Retrocopy | GGKKGAVECCPNCRGTGIQIRIHQIGPGMVQQIQSVCMD-QGHGERISPKDRCKSCNGRKIVREKKILEV |
Parental | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL |
HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVL.QKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL | |
Retrocopy | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLYQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL |
Parental | DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK |
D.RTIVITSHPGQIVKHGDIKCVLNEGMPIY.RPYEKG.LI.EFKVNFPEN.FLSPDK.....KLLPERK | |
Retrocopy | DSRTIVITSHPGQIVKHGDIKCVLNEGMPIYHRPYEKGHLIMEFKVNFPENDFLSPDK----QKLLPERK |
Parental | EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS | |
Retrocopy | EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .00 RPM | 20 .30 RPM |