RetrogeneDB ID: | retro_cfam_1668 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:65617998..65618609(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCAFG00000001818 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 91.71 % |
Parental protein coverage: | 51.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIK |
.TT.YDVLG.KPNATQEELKKA.RKLALKYHPDKNPNEGEK.KQIS.AY.VLSDAKKRELYDKGGEQAIK | |
Retrocopy | KTTHYDVLGIKPNATQEELKKAHRKLALKYHPDKNPNEGEKVKQISRAYKVLSDAKKRELYDKGGEQAIK |
Parental | EGGAGGGFGSPMDIFDMF-FGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGG |
EGGAGGGFGSPMDIFDMF.FGGGGRM.RER.GKNVVHQLSVTLED.YNGATRKLALQKNVICDKCEGRGG | |
Retrocopy | EGGAGGGFGSPMDIFDMF<FGGGGRM*RERNGKNVVHQLSVTLEDSYNGATRKLALQKNVICDKCEGRGG |
Parental | KKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKI |
KKGAV.CCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG.G.RISPKDRCK.CNGRKI.RE.KI | |
Retrocopy | KKGAVKCCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGRGGRISPKDRCKGCNGRKILRENKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .44 RPM |
SRP017611_brain | 0 .00 RPM | 52 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .41 RPM |
SRP017611_liver | 0 .00 RPM | 20 .30 RPM |