RetrogeneDB ID: | retro_amel_1324 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193195.1:804187..804671(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSAMEG00000011563 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 73.05 % |
Parental protein coverage: | 79.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QMKETIMNQEKL-AKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQLSLKKLGVNNISGIEEVNMFTNQ |
...ET.M.Q..L.AKL.A.V.IGGK.T....KKVVH.TATADDKK.Q.SLKKLG.NNISGIE..N.FTNQ | |
Retrocopy | KIEETVMSQGTL<AKLKAHVCIGGKRT--Q*KKVVHETATADDKKFQASLKKLGANNISGIEKANVFTNQ |
Parental | G-TVIHFNNPKVQASLAANTF--TITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAP |
G.TVIHFNNPK.QASLA..T...TITGHA.TKQLTEMLPSIL.QL..DSLT.LRR.AEALPKQS...KAP | |
Retrocopy | G<TVIHFNNPKLQASLAV*TLIITITGHAKTKQLTEMLPSILKQLSEDSLTPLRRRAEALPKQSMNAKAP |
Parental | LATGEDDDDEVPDLVENFDEASKNEAN |
LAT.....DEVPDL.ENFDEASKNEAN | |
Retrocopy | LAT-RKEEDEVPDLTENFDEASKNEAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |