RetrogeneDB ID: | retro_mmul_2424 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:109234849..109235327(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9701 | ||
Ensembl ID: | ENSMMUG00000022291 | ||
Aliases: | None | ||
Description: | transcription factor BTF3 [Source:RefSeq peptide;Acc:NP_001248021] |
Percent Identity: | 60.24 % |
Parental protein coverage: | 78.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQ-FSLKKLGVNNISGIEEASVNMFT |
.MKE.IMN.EKLAKL...V....K..A.RKK..VHRT..A...KL..FSLKKL.VNNISGI.E...NM.T | |
Retrocopy | RMKEIIMNWEKLAKLES*VCNSEKIIASRKK-MVHRTSIANN*KLG<FSLKKLEVNNISGIKEG--NMCT |
Parental | NQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTS-LRRLAEALPKQSVDGKAP |
NQ..V..FNN...QASLA.NT.TITGHAETKQL..MLPSILNQLG.D.LTS.LR................ | |
Retrocopy | NQRMVMYFNNALGQASLAVNT-TITGHAETKQLRQMLPSILNQLGTDNLTS<LRETDKLFCSNNLGDGKA |
Parental | LATGEDDDDEVPDLVENFDEASKNEA |
.ATG....DEVPDL.E.FDEASKN.A | |
Retrocopy | FATGDNNEDEVPDLGEDFDEASKNKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .08 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .78 RPM |
SRP007412_heart | 0 .00 RPM | 12 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .98 RPM |
SRP007412_liver | 0 .00 RPM | 7 .80 RPM |
SRP007412_testis | 0 .00 RPM | 13 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_625 |