RetrogeneDB ID: | retro_fcat_28 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:78872747..78873203(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026576 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSFCAG00000023973 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 75.51 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VRYGVYGTARRKKKVVHRTATADDKK---LQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA |
V..G..GTA..KK.VV.RTATAD.KK...LQFSLKKL.VNN.SGIEE.NMFTNQGTVIHFNNPKVQA..A | |
Retrocopy | VHIGGKGTACQKK-VVQRTATADKKKKKNLQFSLKKLRVNNTSGIEELNMFTNQGTVIHFNNPKVQALRA |
Parental | ANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFD |
.NTF.ITGH...KQLTEMLPSILNQL.A.SLTS.RRLA..LPKQS.D.KA.LAT...DDDE..DLV.NFD | |
Retrocopy | MNTFIITGHTQIKQLTEMLPSILNQLYANSLTSFRRLADSLPKQSLDEKAQLATRKVDDDEILDLVYNFD |
Parental | EASKNEA |
EASKNEA | |
Retrocopy | EASKNEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 42 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 162 .11 RPM |
SRP017611_liver | 0 .00 RPM | 109 .78 RPM |