RetrogeneDB ID: | retro_amel_1334 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193210.1:638406..638829(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSAMEG00000011563 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 62.84 % |
Parental protein coverage: | 69.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | PPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQLSLKKLGVNNIS |
P.P..........MK..IMNQE.LAK.Q..VR..GKGTA...KK.VHR.ATAD.KK.Q..LKKLGVNN.S | |
Retrocopy | PSPPVRSHFHSNKMKGAIMNQEILAKPQTHVRHSGKGTAY-PKKLVHRPATADNKKFQFFLKKLGVNNTS |
Parental | -GIEEVNMFTNQGTV-IHFNNPKVQASLAA-NTFTITGHAETKQLT-EMLPSILNQLG-ADSLTSLRRLA |
.GIEE.NMF.NQGT..IHF.NPKVQASLA....FTI.G..ET.QLT....P.....LG.ADSL.SLRRLA | |
Retrocopy | >GIEEMNMFPNQGTG<IHFHNPKVQASLAG<KAFTILGRPETEQLT<KCYPVSSTDLG<ADSLASLRRLA |
Parental | EALPKQSV |
EALPK.SV | |
Retrocopy | EALPK*SV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |