RetrogeneDB ID: | retro_fcat_187 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:146056331..146056682(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022315 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSFCAG00000023973 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 87.29 % |
Parental protein coverage: | 72.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADS |
QFSLKKLGVNNISGIEEVNMFTNQGT..HF.NPKVQASLAA.TFTITGHAE.KQLTEMLPS.LNQLGAD. | |
Retrocopy | QFSLKKLGVNNISGIEEVNMFTNQGTGVHFKNPKVQASLAAKTFTITGHAEAKQLTEMLPSFLNQLGADG |
Parental | LTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN |
LTSL.RLAEALP.Q.VDGK.PLATGE..DD.VPDLVEN.DEASKNEAN | |
Retrocopy | LTSL-RLAEALPTQCVDGKVPLATGEEGDDDVPDLVENLDEASKNEAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 42 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 162 .11 RPM |
SRP017611_liver | 0 .00 RPM | 109 .78 RPM |