RetrogeneDB ID: | retro_fcat_1044 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:74158478..74158791(-) | ||
Located in intron of: | ENSFCAG00000019116 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSFCAG00000023973 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 78.1 % |
Parental protein coverage: | 64.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQ-LGADSLTS |
KKL..NNISGIEEV.MFTNQGTVIHF.NP.VQASLAANTF.ITGHAET.QL.EML.SILNQ.L.ADSLT. | |
Retrocopy | KKLDINNISGIEEVSMFTNQGTVIHFHNPEVQASLAANTFAITGHAETEQLAEMLRSILNQ>LEADSLTG |
Parental | LRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVEN |
LRRLAE.LP.QSVDGKA.L.T.E..D..V.DLV.N | |
Retrocopy | LRRLAEVLPTQSVDGKAQLTTREEEDGGVSDLVGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 42 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 162 .11 RPM |
SRP017611_liver | 0 .00 RPM | 109 .78 RPM |