RetrogeneDB ID: | retro_fcat_919 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:89604064..89604468(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030600 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSFCAG00000023973 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 71.01 % |
Parental protein coverage: | 83.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VRYGVYGTARRKKKVVHRTATADDKK-LQFSLKK-LGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAA |
VR.G..GTA.RKK.VVHR.ATA..KK.L.FS.K..LGVNNIS..EEV..FTNQGTV.H..N.KVQ.SLAA | |
Retrocopy | VRTGGKGTACRKK-VVHRIATAEEKK>L*FS*KN>LGVNNISHTEEVTIFTNQGTVRHYHNSKVQVSLAA |
Parental | NTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENF |
.TFTITGHAE.K.LTE.LPSIL.QLG.DS.TS.RRLAE.L.K.S.DGKA.LAT.E..D.EVPDLV.NF | |
Retrocopy | STFTITGHAEAKLLTESLPSILTQLGTDSGTSVRRLAEVLSKLSGDGKASLAT-EETDNEVPDLVDNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 42 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 162 .11 RPM |
SRP017611_liver | 0 .00 RPM | 109 .78 RPM |