RetrogeneDB ID: | retro_fcat_419 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:24791732..24792131(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3 | ||
Ensembl ID: | ENSFCAG00000023973 | ||
Aliases: | None | ||
Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
Percent Identity: | 76.81 % |
Parental protein coverage: | 85.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KKTEKTDPKVRKELETVRYGVYGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTV |
K.T.....K..K....V..G..GTA..KK.VVHRTATA.DKKLQFSLKKLGVNNISGI.E.N..TNQGTV | |
Retrocopy | KETITNQ*KLAKLQAPVCIGGKGTAP*KK-VVHRTATAYDKKLQFSLKKLGVNNISGIAEMNILTNQGTV |
Parental | IHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATG |
IHFNNPKVQ....AN.FTITGHAETKQLTEMLPSILNQLGADSL.SLRRL.EALPKQS.DGKAPLATG | |
Retrocopy | IHFNNPKVQ----ANAFTITGHAETKQLTEMLPSILNQLGADSLASLRRLVEALPKQSGDGKAPLATG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 42 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 162 .11 RPM |
SRP017611_liver | 0 .10 RPM | 109 .78 RPM |