RetrogeneDB ID: | retro_amel_1521 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193548.1:444494..444990(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSAMEG00000013022 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 67.05 % |
Parental protein coverage: | 96.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV |
MIIY.DLIS.DEMFS.IYKI.EI.D.L.L.VEGKMVSRTEGNIDDSLIGGNAS.EGPE....ES.VITGV | |
Retrocopy | MIIYWDLISCDEMFSNIYKI*EIIDRLGLGVEGKMVSRTEGNIDDSLIGGNASTEGPEAKRMESAVITGV |
Parental | DI-VMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGEN |
.I...N...Q.T.FT....K...K.Y.K..........P..V...MTG.AEQI.H.LANFKNYQFF.G.. | |
Retrocopy | EI>IVNNYFQKTTFT----KEAYKKYIKDYMKSIKGKHPGSV---MTGVAEQIRHVLANFKNYQFFMGVH |
Parental | MNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC |
MNPDGMVALLDY.ED.VTPYMIFFKDGLEM..C | |
Retrocopy | MNPDGMVALLDYHEDSVTPYMIFFKDGLEMQNC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |