RetrogeneDB ID: | retro_fcat_1544 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:40197554..40197905(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSFCAG00000002107 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 77.31 % |
Parental protein coverage: | 68.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GPEGEGTEST-VITGVDIVMNHHLQETSFTKEAY-KKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIK |
GP.....ES..V.TGV.IV.NHHL.ETSFTKEAY...YIK.Y.KSIKG.LEEQRPERVKPFMTGAA.QI. | |
Retrocopy | GPRSRISESL>VLTGVGIVINHHLWETSFTKEAY<REYIKHYVKSIKGRLEEQRPERVKPFMTGAAGQIE |
Parental | HILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC |
HILA.FKNYQ.FIGENMNP.GM.A.L.Y.E.GVTPYMIFFKDGLEMEKC | |
Retrocopy | HILAIFKNYQSFIGENMNPGGMAAPLAYCEEGVTPYMIFFKDGLEMEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 229 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 2197 .09 RPM |
SRP017611_liver | 0 .10 RPM | 1440 .84 RPM |