RetrogeneDB ID: | retro_amel_1878 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL195105.1:9062..9579(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSAMEG00000013022 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 76.88 % |
Parental protein coverage: | 96.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MIIYRDLISHDEMFSDIYKIREIADGLCLEVEG-KMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITG |
MI.Y..LISHD.MF...YKI..I...LC.EVEG.K.VS.TE.NIDDSLI.GNAS.EGP...GT.STVITG | |
Retrocopy | MIVYQHLISHDAMFFTFYKIWKITEVLCPEVEG>KIVSKTEVNIDDSLIDGNASTEGPDAQGT*STVITG |
Parental | VDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGEN |
VDIV.NHHLQETSFTKE.YKKYIK.YMKS.KG.LEEQRPERVKPFMTGA..QIKHILANFKNY.FFIGEN | |
Retrocopy | VDIVLNHHLQETSFTKEGYKKYIKGYMKSVKGQLEEQRPERVKPFMTGAVKQIKHILANFKNY*FFIGEN |
Parental | MNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC |
MNP.GMV.LLDY.ED.V.PY...FKDGLE.EKC | |
Retrocopy | MNPNGMVVLLDYSEDHVNPYAVSFKDGLEIEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |