RetrogeneDB ID: | retro_fcat_553 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:109991095..109991392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSFCAG00000002107 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 68.69 % |
Parental protein coverage: | 57.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFT |
S...K..EI..GLCLEVEGKMVSR..GNIDD..IG.NA....P..E...STVITGVDIVMNHH.Q.T..T | |
Retrocopy | SAMMKC*EILGGLCLEVEGKMVSRIVGNIDDLSIGENATPDDPKSELSKSTVITGVDIVMNHHWQKTNLT |
Parental | KEAYKKYIKDYMKSIKGKLEEQRPERVKP |
K.AYKKYIKD.M.SIKGKLEEQR.E..KP | |
Retrocopy | K*AYKKYIKDDMNSIKGKLEEQRQE*AKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 229 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 2197 .09 RPM |
SRP017611_liver | 0 .00 RPM | 1440 .84 RPM |