RetrogeneDB ID: | retro_fcat_1366 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:118082228..118082622(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026873 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSFCAG00000002107 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 77.44 % |
Parental protein coverage: | 76.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV |
MIIY.DLIS.DEM.SDIYKI.EI...LCLEV..KMVSRTEGNIDDSL.GGNAS.E.P.GEGTESTVI.GV | |
Retrocopy | MIIYQDLISCDEMVSDIYKILEIMESLCLEVQRKMVSRTEGNIDDSLVGGNASIEDPGGEGTESTVIAGV |
Parental | DIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQ-RPERVKPFMTGAAEQIKHILANFKNY |
DIVMNHH..ET.FTKEAYKKYIKDYMK..KGK.....R.ERVKPFM..AAEQIKHIL..F.NY | |
Retrocopy | DIVMNHHSRETTFTKEAYKKYIKDYMK*TKGKGLKE>RSERVKPFMQ-AAEQIKHILVHFQNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 229 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 2197 .09 RPM |
SRP017611_liver | 0 .00 RPM | 1440 .84 RPM |