RetrogeneDB ID: | retro_amel_472 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192464.1:210686..211159(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000003597 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSAMEG00000013022 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 66.46 % |
Parental protein coverage: | 89.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDI |
IY.DLIS.D.M.S..YKI.E.A........GK.VSRTEGN.DDS.IGGNASAE.PE.E.TESTVITG.DI | |
Retrocopy | IYPDLISQDDMLSGNYKIWELAFRHDWGWRGKLVSRTEGNTDDSFIGGNASAEVPEVESTESTVITGADI |
Parental | VMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN-FKNYQFFIGENMN |
V.NHHL......K.......K..M.SIK.K.EEQR.ERVK..MTG.AE.IKH..AN.F.NYQFFIGEN.N | |
Retrocopy | VTNHHLPKPAPQKKPTRTTSK--MQSIKDKFEEQRLERVKRSMTGTAERIKHNVAN<FENYQFFIGENVN |
Parental | PDGMVALLDYREDGVTPYMIF |
PDGMVALLDY.EDGVTP.MIF | |
Retrocopy | PDGMVALLDYFEDGVTP*MIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |