RetrogeneDB ID:

retro_nleu_2678

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397396.1:952321..952760(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS10
Ensembl ID:ENSNLEG00000008336
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2678
ATGTCGATGCCTAAGAAGAATCAGATTGCCACTTATGAACTCATTTTCAAGGAGGGAGTCATGGTGGCCAAGAAGGATGT
CCACATGACTAAGCACCCGGAACTGGCAGACAAGAATATGCCCAAGGTTCACTCATGAAGGCCATGCAGTCTCTGAAGTC
CTGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTATTGCCACCTCACCAAGGAGGGTATCCAGTATCTCTGTG
ATTACCTTCACTTGCGCCCGGAGATTGTGCGCAGCCATCCAGAGACTGGCAGGCCTCGGCCTAAAGGTGTGGAGGGTAAG
CAACCTGCAAGACTCACAAGAGGGCAAGCCGACAGAGATACCTGCAGACGGAGTGCTGTGCCCCCGGTGCCTACAAGAAA
GCCCAGGTTGGGGCTGGGTCAACAACCAAATTCCAGTTT

ORF - retro_nleu_2678 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.68 %
Parental protein coverage: 91.02 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLH-VMKAMQSLKSRGYVKEQFAWRHFYW
M.MPKKN.IA.YEL.FKEGVMVAKKDVHM.KHPELADKN.P..H..MKAMQSLKS.GYVKEQFAWRHFY.
RetrocopyMSMPKKNQIATYELIFKEGVMVAKKDVHMTKHPELADKNMPKVH<LMKAMQSLKS*GYVKEQFAWRHFYC
ParentalYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVP-PGADK
.LT.EGIQYL.DYLHL.PEIV.......RP...RP..KG.EG..PARLTRG.ADRDT.RRSAVP.PGA.K
RetrocopyHLTKEGIQYLCDYLHLRPEIVRSHPETGRP---RP--KGVEGKQPARLTRGQADRDTCRRSAVP<PGAYK
ParentalKAEAGAGSATEFQF
KA..GAGS.T.FQF
RetrocopyKAQVGAGSTTKFQF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2678 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 140 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000012142 retrocopies
Callithrix jacchus ENSCJAG000000152504 retrocopies
Cavia porcellus ENSCPOG000000086132 retrocopies
Dasypus novemcinctus ENSDNOG000000116702 retrocopies
Dipodomys ordii ENSDORG000000120606 retrocopies
Homo sapiens ENSG0000012461424 retrocopies
Latimeria chalumnae ENSLACG000000172191 retrocopy
Loxodonta africana ENSLAFG000000085391 retrocopy
Macaca mulatta ENSMMUG000000002672 retrocopies
Monodelphis domestica ENSMODG000000139292 retrocopies
Mustela putorius furoENSMPUG000000031173 retrocopies
Mus musculus ENSMUSG000000521469 retrocopies
Nomascus leucogenys ENSNLEG00000008336 24 retrocopies
Oryctolagus cuniculus ENSOCUG000000113732 retrocopies
Ochotona princeps ENSOPRG000000026932 retrocopies
Procavia capensis ENSPCAG000000127951 retrocopy
Pongo abelii ENSPPYG000000165162 retrocopies
Pan troglodytes ENSPTRG0000001806326 retrocopies
Rattus norvegicus ENSRNOG000000004904 retrocopies
Sarcophilus harrisii ENSSHAG000000007313 retrocopies
Tupaia belangeri ENSTBEG0000000149216 retrocopies
Tursiops truncatus ENSTTRG000000150642 retrocopies



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