RetrogeneDB ID: | retro_chof_1067 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_192705:877..1153(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSCHOG00000009079 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 90.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | STDTDVSLSSYDEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSVHLIHMRVAAQGFV |
STDTDVSLSSYDEDQ.SKLIRKA.EAPFVPIGMAGFAAIVA.GLYKLKS.GNTKMSV..IH..V.AQGFV | |
Retrocopy | STDTDVSLSSYDEDQESKLIRKAREAPFVPIGMAGFAAIVACGLYKLKSSGNTKMSVPVIHTHVSAQGFV |
Parental | VGAMTLGMGYSLYREYWAKPKL |
VGAMTLGMGYSLYREYWAKPKL | |
Retrocopy | VGAMTLGMGYSLYREYWAKPKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |