RetrogeneDB ID: | retro_hsap_3975 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:76214530..76214809(+) | ||
Located in intron of: | ENSG00000249395 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253229 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSG00000181061 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 79.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF |
.STDT..SL.SY.EDQGSKLI..AK.APF.P.G.AGFAAIVA.GLYKLKSRGNTKMS.HLIHM.VAAQGF | |
Retrocopy | LSTDTDASLSSYDEDQGSKLISRAKDAPFIPIGMAGFAAIVAQGLYKLKSRGNTKMSLHLIHMHVAAQGF |
Parental | VVGAMTVGMGYSMYREFWAKPKP |
.VGAMTV.MG.SM..EFWAKPKP | |
Retrocopy | LVGAMTVDMG*SMFQEFWAKPKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 80 .37 RPM |
bodymap2_adrenal | 0 .00 RPM | 75 .49 RPM |
bodymap2_brain | 0 .00 RPM | 265 .62 RPM |
bodymap2_breast | 0 .00 RPM | 136 .95 RPM |
bodymap2_colon | 0 .00 RPM | 119 .79 RPM |
bodymap2_heart | 0 .00 RPM | 232 .37 RPM |
bodymap2_kidney | 0 .00 RPM | 230 .65 RPM |
bodymap2_liver | 0 .00 RPM | 251 .62 RPM |
bodymap2_lung | 0 .00 RPM | 113 .54 RPM |
bodymap2_lymph_node | 0 .00 RPM | 74 .01 RPM |
bodymap2_ovary | 0 .00 RPM | 64 .13 RPM |
bodymap2_prostate | 0 .00 RPM | 111 .30 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 41 .27 RPM |
bodymap2_testis | 0 .00 RPM | 107 .61 RPM |
bodymap2_thyroid | 0 .00 RPM | 151 .06 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 56 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3269 |
Macaca mulatta | retro_mmul_2298 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |