RetrogeneDB ID: | retro_chof_495 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_114730:3000..3273(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSCHOG00000009079 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 92.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | STDTDVSLSSYDEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSVHLIHMRVAAQGFV |
ST..DVSLS.YDED.GSKLI.KAKEAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMS.HLIHMRVAAQGFV | |
Retrocopy | STGIDVSLS-YDEDYGSKLIQKAKEAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFV |
Parental | VGAMTLGMGYSLYREYWAKPKL |
VGAM.LGMGYSLYREYWAKPKL | |
Retrocopy | VGAMILGMGYSLYREYWAKPKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |