RetrogeneDB ID: | retro_mmul_1093 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:10920067..10920343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.650 | ||
Ensembl ID: | ENSMMUG00000018783 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.61 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSLHLIHMRVAAQGF |
MSTDT.VSL.S..EDQGSKLIRKAKEA.FVPIG.AGFAA.V.YGLY.LKSRGNT.MSL.LIHM.VAAQGF | |
Retrocopy | MSTDTDVSLSSNDEDQGSKLIRKAKEALFVPIGIAGFAALVTYGLYTLKSRGNTQMSLQLIHMCVAAQGF |
Parental | VVGAMTIGMGYSMYREFWAKPK |
VVGAMT.G.G.S.YREFWAKPK | |
Retrocopy | VVGAMTVGKGCSVYREFWAKPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 65 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 50 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .83 RPM |
SRP007412_heart | 0 .00 RPM | 63 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 52 .35 RPM |
SRP007412_liver | 0 .00 RPM | 19 .95 RPM |
SRP007412_testis | 0 .00 RPM | 19 .60 RPM |