Parental gene: | HIGD1A, ENSG00000181061 |
| Aliases: | None |
| Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 3:42798668..42846023(-) |
>ENSG00000181061
ATGGAGCAGAAGCTTGTGGAGGAGATTCTTCAAGCAATCACTATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGA
GGAAGATCAGGGATCAAAACTCATTCGAAAAGCTAAAGAGGCACCATTCGTACCCGTTGGAATAGCGGGTTTTGCAGCAA
TTGTTGCATATGGATTATATAAACTGAAGAGCAGGGGAAATACTAAAATGTCCATTCATCTGATCCACATGCGTGTGGCA
GCCCAAGGCTTTGTTGTAGGAGCAATGACTGTTGGTATGGGCTATTCCATGTATCGGGAATTCTGGGCAAAACCTAAGCC
TTAG
ATGGAGCAGAAGCTTGTGGAGGAGATTCTTCAAGCAATCACTATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGA
GGAAGATCAGGGATCAAAACTCATTCGAAAAGCTAAAGAGGCACCATTCGTACCCGTTGGAATAGCGGGTTTTGCAGCAA
TTGTTGCATATGGATTATATAAACTGAAGAGCAGGGGAAATACTAAAATGTCCATTCATCTGATCCACATGCGTGTGGCA
GCCCAAGGCTTTGTTGTAGGAGCAATGACTGTTGGTATGGGCTATTCCATGTATCGGGAATTCTGGGCAAAACCTAAGCC
TTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 251 .62 RPM |
| bodymap2_lung | 113 .54 RPM |
| bodymap2_breast | 136 .95 RPM |
| bodymap2_adipose | 80 .37 RPM |
| bodymap2_adrenal | 75 .49 RPM |
| bodymap2_skeletal_muscle | 41 .27 RPM |
| bodymap2_thyroid | 151 .06 RPM |
| bodymap2_prostate | 111 .30 RPM |
| bodymap2_colon | 119 .79 RPM |
| bodymap2_testis | 107 .61 RPM |
| bodymap2_brain | 265 .62 RPM |
| bodymap2_heart | 232 .37 RPM |
| bodymap2_white_blood_cells | 56 .11 RPM |
| bodymap2_lymph_node | 74 .01 RPM |
| bodymap2_ovary | 64 .13 RPM |
| bodymap2_kidney | 230 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012431 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000009079 | ortholog_one2one | 10 retrogenes | |
| Callithrix jacchus | ENSCJAG00000032668 | ortholog_one2many | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000000703 | ortholog_one2one | 11 retrogenes | |
| Equus caballus | ENSECAG00000010978 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000007493 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000000537 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000018783 | ortholog_one2one | 11 retrogenes | |
| Monodelphis domestica | ENSMODG00000013605 | ortholog_one2many | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000011870 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000038412 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011358 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000016072 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013974 | ortholog_one2one | 16 retrogenes | |
| Pan troglodytes | ENSPTRG00000014802 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019428 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000011290 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009681 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000002324 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000009760 | ortholog_one2one | 8 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_205 | 90.00 | 93.46 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_391 | 76.24 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_884 | 86.00 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_996 | 82.56 | 90.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_1003 | 98.00 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_1221 | 78.08 | 78.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_1313 | 63.37 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_2391 | 69.31 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_2411 | 71.84 | 94.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_2969 | 94.00 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_hsap_3269 | 82.18 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_hsap_3975 | 79.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_hsap_4079 | 78.22 | 93.46 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000181061 retrocopies