RetrogeneDB ID:

retro_mmul_603

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:43608482..43608760(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.650
Ensembl ID:ENSMMUG00000018783
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmul_603
ATATCAACCAACACAGATGTTTTTCTTTCTTCATATAATGAAGATCAGGAATCAAAACCTATTTGAAAAGCTGAAGATAC
ACCATTAATCCCCACTGGAATAGCAGGTTTTGCAGCAATTGTTGCATATGAATTAACAAATTAAAGATCAGGGGAAATAT
GAAAACCTTCCTTCACCTGACCCACATGTGTATGGCAACCCAAGGCTTTGTTGTGCGAGCAATGACTCTTGGTATGGGCT
ATTCCCTATATTGGGAATTCTGGGCAAAACCTAAGCCT

ORF - retro_mmul_603 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.02 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLY-KLKSRGNTKMSLHLIHMRVAAQG
.ST.T.V.L.SY.EDQ.SK.I.KA...P..P.G.AGFAAIVAY.L..KLK.RGN.K..LHL.HM..A.QG
RetrocopyISTNTDVFLSSYNEDQESKPI*KAEDTPLIPTGIAGFAAIVAYELT<KLKIRGNMKTFLHLTHMCMATQG
ParentalFVVGAMTIGMGYSMYREFWAKPKP
FVV.AMT.GMGYS.Y.EFWAKPKP
RetrocopyFVVRAMTLGMGYSLYWEFWAKPKP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 65 .89 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 50 .85 RPM
SRP007412_cerebellum 0 .00 RPM 56 .83 RPM
SRP007412_heart 0 .00 RPM 63 .71 RPM
SRP007412_kidney 0 .00 RPM 52 .35 RPM
SRP007412_liver 0 .00 RPM 19 .95 RPM
SRP007412_testis 0 .00 RPM 19 .60 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_603 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_603 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_603 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2411
Pongo abelii retro_pabe_1776

Parental genes homology:
Parental genes homology involve 22 parental genes, and 114 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000124311 retrocopy
Choloepus hoffmanni ENSCHOG0000000907910 retrocopies
Callithrix jacchus ENSCJAG000000326689 retrocopies
Cavia porcellus ENSCPOG0000000070311 retrocopies
Equus caballus ENSECAG000000109781 retrocopy
Echinops telfairi ENSETEG000000074934 retrocopies
Felis catus ENSFCAG000000005372 retrocopies
Homo sapiens ENSG0000018106113 retrocopies
Gorilla gorilla ENSGGOG000000167593 retrocopies
Macaca mulatta ENSMMUG00000018783 11 retrocopies
Monodelphis domestica ENSMODG000000136056 retrocopies
Mustela putorius furoENSMPUG000000118703 retrocopies
Mus musculus ENSMUSG000000384121 retrocopy
Otolemur garnettii ENSOGAG000000113583 retrocopies
Ochotona princeps ENSOPRG000000160721 retrocopy
Pongo abelii ENSPPYG0000001397416 retrocopies
Pan troglodytes ENSPTRG000000148021 retrocopy
Rattus norvegicus ENSRNOG000000194281 retrocopy
Sus scrofa ENSSSCG000000112901 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000096813 retrocopies
Tupaia belangeri ENSTBEG000000023245 retrocopies
Tursiops truncatus ENSTTRG000000097608 retrocopies



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