RetrogeneDB ID: | retro_itri_1636 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393597.1:301728..302004(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSSTOG00000009681 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 70.21 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSTNTDVSLSSYDEDQG-SKFIRKAKEAPFVPIGMAGFAAIVAYGLYKLKNRGNTKMSIHLIHMRVAAQG |
MS.NTDVS.SSYDEDQ..SK.I.KA.EAP.VPIGMAGF.AIVA.GL.KLKNRGNTK.S.HLIHM..AAQG | |
Retrocopy | MSANTDVSFSSYDEDQE>SKLIQKATEAPVVPIGMAGFGAIVANGL*KLKNRGNTKLSTHLIHMCAAAQG |
Parental | FVVGAMTLGMGYSM-YKEFWAKPK |
FVV....L...YS...KEFW..P. | |
Retrocopy | FVVETTSLALVYSI<IKEFWVRPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |