RetrogeneDB ID: | retro_cpor_420 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_15:4366670..4366942(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSCPOG00000000703 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.69 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSSNTDVSLSSYDEDQGSKLIRKAKEAPFV-PIGMAGFAAIVAYGLYRLKSRGDTKMSVHLIHMRVAAQG |
MS..T.....SYDEDQ..KL..KAK...FV.P.....F..I..Y.L..LK.R..TKMSV.L.H..VAAQG | |
Retrocopy | MSADTNIPF*SYDEDQRFKLS*KAKQTAFV<PQRNSDFSGIIIYAL*KLKKR-NTKMSVYLFHLCVAAQG |
Parental | FVVGAMTLGMGYSLYREFWAKPK |
FVV.A.T.G.GYS.Y.EF....K | |
Retrocopy | FVVRAVTAGLGYSMYQEFCKESK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .59 RPM |
SRP017611_liver | 0 .00 RPM | 18 .59 RPM |
SRP040447_lung | 0 .00 RPM | 20 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 31 .37 RPM |