RetrogeneDB ID: | retro_fcat_414 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:10152835..10153048(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSFCAG00000000537 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 85.92 % |
Parental protein coverage: | 73.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IRKAREAPFVPIGMAGFAAIVAYGLYRLKSRGNTKMSVHLIHMRVAAQGFVVGAMTLGMGYSMYKEFWAK |
IRKAREAPFVP.GMAGFAAIVAYG.Y.LKSRG.T..SV.LIH.RVAAQGFVVGAMTLGMGY.M.KEFWAK | |
Retrocopy | IRKAREAPFVPGGMAGFAAIVAYGPYQLKSRGGTRRSVQLIHVRVAAQGFVVGAMTLGMGYPMCKEFWAK |
Parental | P |
P | |
Retrocopy | P |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .51 RPM |
SRP017611_kidney | 0 .10 RPM | 5 .77 RPM |
SRP017611_liver | 0 .00 RPM | 5 .16 RPM |