RetrogeneDB ID: | retro_cjac_975 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:39756285..39756702(+) | ||
Located in intron of: | ENSCJAG00000002054 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CACYBP | ||
Ensembl ID: | ENSCJAG00000008989 | ||
Aliases: | None | ||
Description: | calcyclin binding protein [Source:HGNC Symbol;Acc:30423] |
Percent Identity: | 87.77 % |
Parental protein coverage: | 67.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KTTRKRIRDALTAEKSKIETEIKNKMQQKSQKKAELLENEKPAAVVAPITTGYTVKISNYGWDQSDKFVK |
K...KR.RDALTAEKSK.ETEIKNKMQQKSQKKA.LL.NEKPAAVVAPITTGYTVK.SNY.WDQSDKFVK | |
Retrocopy | KRLGKRVRDALTAEKSKWETEIKNKMQQKSQKKAALLDNEKPAAVVAPITTGYTVKTSNYEWDQSDKFVK |
Parental | IYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKK |
IYITLT.VHQVPTENVQV.FTERSFDLLVKNL.GKSYSMIVNNLLK.ISV...SKK.KTDTVLILCRKK | |
Retrocopy | IYITLTAVHQVPTENVQVPFTERSFDLLVKNLSGKSYSMIVNNLLKSISVGSISKKIKTDTVLILCRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .31 RPM | 28 .64 RPM |
SRP051959_heart | 0 .16 RPM | 31 .38 RPM |
SRP051959_kidney | 0 .29 RPM | 37 .34 RPM |
SRP051959_liver | 0 .35 RPM | 35 .46 RPM |
SRP051959_lung | 0 .18 RPM | 46 .36 RPM |
SRP051959_lymph_node | 0 .43 RPM | 70 .00 RPM |
SRP051959_skeletal_muscle | 0 .48 RPM | 23 .54 RPM |
SRP051959_spleen | 0 .34 RPM | 48 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_706 |
Pan troglodytes | retro_ptro_505 |
Gorilla gorilla | retro_ggor_601 |
Pongo abelii | retro_pabe_520 |